Scaffold Ga0302125_10040879

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302125_10040879

Scaffold Ga0302125_10040879

Overview

Basic Information
Taxon OID	3300031638 Open in IMG/M
Scaffold ID	Ga0302125_10040879 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB4_surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1604
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	75.0007	Long. (^o)	-150.0027	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017220	Metagenome	242	Y
F020442	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302125_100408793	F017220	AGGAG	MSDPRLIALSERLNKYVGLIRAENPKMKENEILDQASKMALTEQKTFEAKMGMAVSDAVADRFGDGTLIEKAEDGSTIVRVNNEWQQSRGSKISQDGFHKKGYSTITMPKDIDITTPEGDHKAGKFVEELRAAKKRGDKIKQAAEHSAWENRKTQIVIDKKEDL
Ga0302125_100408794	F020442	AGGA	MTNSILKKSALEKLEKLGLSQEEVLSLIDDGEETIVAEDGESDDTSESKSWQQLVMEEHLGYYNKRYNTNYNFDEYYDGVVNGEIEVHYNWKQMLGLEEQTPFPVDPNVNTEKFKKHGN

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