Scaffold Ga0302125_10043503

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302125_10043503

Scaffold Ga0302125_10043503

Overview

Basic Information
Taxon OID	3300031638 Open in IMG/M
Scaffold ID	Ga0302125_10043503 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB4_surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1548
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	75.0007	Long. (^o)	-150.0027	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025321	Metagenome / Metatranscriptome	202	Y
F050689	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302125_100435031	F025321	GAG	MTTGVLMYCFDTPEVNYHRLAERCVEQVRKYLKLEITIVTDPETYKKFKPLGMINYKLVEAKTTNTRPYRGKSVAWYNKERALA
Ga0302125_100435033	F050689	N/A	KSDAQIECQDLDRNTVIHNLTFDMAPGWHKITMPFSRKDLISIEVDGEDIRYYINTGHNTEKGYVLWLNSDLDQFYTRTSECLAQDDLLRFKNMPKKYMHTVSWNEKVEGDFIPEHIKRFFAKGDGPFWYLKSDYHRLPYIEYNGGPVPEIDPATDLDEDLDFIDEKFQGAGQCKSLKKNPVLPTIKTEQLKNKNLRNLFQQLGFTDMLQITYVELGPKSIIPIHRDDSTYFDANHILQGPSQGWLRISGDHEKVKFKFKNAGLIDVSKPMFINNREFVHSLVHSGDKPRGVLLFTGISTLTNKEFLEK

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