NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302125_10058812

Scaffold Ga0302125_10058812


Overview

Basic Information
Taxon OID3300031638 Open in IMG/M
Scaffold IDGa0302125_10058812 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB4_surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1301
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011113Metagenome / Metatranscriptome295Y
F052863Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0302125_100588121F052863N/ANETMHGYNPIFVTEKFINAVIGLNLVIMNGPAGTVKLLEDLGWNSCRHVVNHDYDDTTDPILRCEQAIRFNYKLFSDPAYCNKVWQENLNILHDNSKWARDHLYNQILKNCEQQFKEVV
Ga0302125_100588124F011113AGCAGGMATEKLKFKLELYATMWDRPPHAEIMINDKSHFTGDISSTEDKPTVVEF

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