NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302117_10035314

Scaffold Ga0302117_10035314


Overview

Basic Information
Taxon OID3300031639 Open in IMG/M
Scaffold IDGa0302117_10035314 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_32.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2426
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)49
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F001416Metagenome / Metatranscriptome699Y

Sequences

Protein IDFamilyRBSSequence
Ga0302117_100353141F000613N/AAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTVGSATADTTLNFNVNNAEFARAASVSAIVTGEPFGWNGNYVMNDMVTQGAVRNRPVITFTNGTAATRTVDVAIFIGG
Ga0302117_100353145F001416AGGAMPLVKKRLSIAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTVGSATADTTLN

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