NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302117_10051532

Scaffold Ga0302117_10051532


Overview

Basic Information
Taxon OID3300031639 Open in IMG/M
Scaffold IDGa0302117_10051532 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_32.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1946
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)49
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051469Metagenome144Y
F101907Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0302117_100515321F051469AGGAGMIEKFTVEIEVGDRVEVGRMHLANQTIKAIEVDKWGHPVMVLESGRRRGLFNMRLKKLIPEDVKRVQEPSEVMMT
Ga0302117_100515324F101907AGGAGGMAYDGTIPAGGHGNFVSPNTAQEHGSDGAVDFITVDVLAAGTGEVTHPLAAANTAGLHLIREAIQAQGVNILGNGVETAAFEHTFMVRRDSLDTISSTTTAAAIQAAIQALNANSKITLTISSATAADRDMGKLTAMA
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