NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302117_10057448

Scaffold Ga0302117_10057448


Overview

Basic Information
Taxon OID3300031639 Open in IMG/M
Scaffold IDGa0302117_10057448 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_32.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1820
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)49
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029568Metagenome / Metatranscriptome188Y
F043882Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0302117_100574481F029568N/ATMTYRYDLANTHVKIYYESTPEFERVRDICLEEDNWLRNNYTKENLKIEEHTGYGVLYQTSTGKPMVMGGVFSDSRYPPNVAKQINRLYTFPDFRMTATDMTDGFRCTCKLIDALEEVNTYEVYLITMQNRPARPNRGFWKVWCKHMDIASEGAWALGTNGYIQTCPWPVQKCWQNFVWKETKQGAFDNWAPKTITHSEWKELEEGK
Ga0302117_100574483F043882N/AMGTFYIEKPELAYVHVPRTGMAMKKVISDWLHPNFNVLSHVDWMVDHPHLGMVREHYPNAKTITVVRNPWQRVFSLYRKVRDEGYWLDWNGQTVLELKPINEWVADYCNPDIPFEFPRWFNRFTNQVDFINVNNEWVDYICKA
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