NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318555_10093715

Scaffold Ga0318555_10093715


Overview

Basic Information
Taxon OID3300031640 Open in IMG/M
Scaffold IDGa0318555_10093715 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1576
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006575Metagenome / Metatranscriptome370Y
F012935Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0318555_100937151F012935N/ARTAAEELDDLADDLEARLEGSGSGLGGVAQPDRFFLLAGMHRWHELLAEGDYGRPSEISARLVRLADKGPDAGIHVVAWTDGYSTAERALRRAGLGFFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSVASLFAFAREGSLTTSGKWSPA
Ga0318555_100937152F006575GGAGMTTESAMATSPYLSLRQAVRPAILAHRLLAGDQERAGKLATECEDLLYLTGELLKAAGRARILADASPPRMPEEGGGDRQAQLLEAYADAGLLWAKVVGSSLALAGVLVERGEWEDVRALASFLASAGEQSAAAELRIQLGREVWETHREPLRAVSNDMGTAAIEPAISALRAVLREVPEEYPDRNREVNRFLPPLASAIHAIMKEQEADIPYHSRVEHIATGGVAKYPDIVQTSLDELAAEFEGICRRPGGKTT
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