NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0318555_10119837

Scaffold Ga0318555_10119837


Overview

Basic Information
Taxon OID3300031640 Open in IMG/M
Scaffold IDGa0318555_10119837 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1397
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032096Metagenome181Y
F045474Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0318555_101198372F045474GAGGMTATIRPAGLVLAALLLIAGCGGSASTGHTAPQALSCQQQAARIQNLVTQYYYDSGDGYQLKAITELQAARAVWGGMHKEHCPASSYAQALKGFGISF
Ga0318555_101198374F032096N/AVQGFGAATEVVGVIQDFADSPCGAGGAADSAQRRMVLTGGVLVLQEAGMTCMTASGPQARATYRVDGQASTGIFAGARGTGDVTVDVTTHQETLSGTLILMP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.