NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000063

Scaffold Ga0307514_10000063


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000063 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)282863
Total Scaffold Genes290 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)106 (36.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006048Metagenome382Y
F010438Metagenome303Y
F051592Metagenome143Y
F079403Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000063117F010438N/AMTHLVFAMGRLLKLKMWNRGLFMSASDLETVSYATRRVSKALDEAPHWQIIEMYWNTALQKNNIWSIAFEVHTIVIL
Ga0307514_10000063163F006048AGGAGMLKLQPTLDIRLSNGYQVRTQVDEVKSCFIQSASDNIAEHYNLHRFESAAVHLEFIESLLADTKYLIPIAERVEGGVCGPTTMQGKLKSANEWLVSTLLPSTSNPVGNV
Ga0307514_10000063170F051592GAGVENPLLEVVKHADLHCMEEVGLRETSHNTRNMSKYIQSLVAMAQQEFTFGSLGVGIAERS
Ga0307514_1000006342F006048N/AMRAQVAKYKSHFIQSARYIIAELFDLHHFKSDAEHLEFIDSLLADNRYLFLVAEHVEGDVHGPNPTQRVSKAANEWPASTLLPGGSKPAVYLHQILSLAE
Ga0307514_1000006351F079403N/AMRLHNRRHGKHPDVMIKDFRALLNYTQDTTHRSTIYNDTREFLRHKSRNNTYISDEQLHAIEICIFHGIKVQGEGFEGERISQICQSTGIECWRGGDXRNDWVWVKQWPGRCYGAPNGRLPWQLLQLFKMKHLKADGAFVAYWLVLALTRISENSGNLDPVSKFVQLRQAPAAVALQVFSVGNIVGCGHIIPEIASSSKTGDERNERWIVNSHKDLATWKHVYN
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Institute for Fundamental Biomedical Research
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