NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000069

Scaffold Ga0307514_10000069


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000069 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)277323
Total Scaffold Genes360 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)224 (62.22%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F010438Metagenome303Y
F019765Metagenome227Y
F036505Metagenome169Y
F042672Metagenome157Y
F047400Metagenome149Y
F079413Metagenome / Metatranscriptome115Y
F081959Metagenome113Y
F086388Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000069147F036505AGGMSSLGVKDYTKSWKAHERDQQFEENERIDTARIKILRKEGNARINIVSALRPGLAKIIGKVHISTYFECPETEHQIGENACCINYAATCSSK
Ga0307514_10000069167F086388AGGMKNGDKTTVRLEMTAVKEGNNTYVADDIHWHVSQIDCHCQWHFVNHYPRILNCCHGAVARKIGHPVEPYLLSSVEILLLTCSANKDGGKLL
Ga0307514_10000069206F019765GAGMLQVMDNMEASCVVYVKVGTFTHLEQSKISLLTIKKSGMETLTVRYDMIVCVIFM
Ga0307514_10000069211F047400AGGAGMAQYSAGEHHQRRGYMTVRVVNHGIIESIGICTAVIRTMIKFDADKPQDFFRQNVQWMLAIH
Ga0307514_10000069212F004891GGAMIALASGFGMGVGRFSRPLRGVGVLGMPYSALDTTRYVESLCEVLPGAGGLRLIVPSVVAVEVHIDHRCVADGVEAIG
Ga0307514_10000069219F081959GAGGVMSMGMSARIATMWMRMRRNKHRKPMMDQRRMWRTEGIVLESVMIGLYISDL
Ga0307514_10000069223F047400GGAMNPFVLLPLQESMAQHGTGKHDQWRGYMTVLVVNHGIIKSISILTAVIHPMIKFNVDKPRDCFRQEVKWTLAIR
Ga0307514_10000069224F006048AGGAGMLKQRPKLDIRCSNQYHVHAQVDKVKSHFIQSARDNIAELYDLHCFESDAERSEFIDSLLADNKYLFPVAEHVEGGVCSLNSTQRVSKAANEWPASTLLPGGSNPAVYLH
Ga0307514_10000069225F010438GGAGMWIRRPFMSASNLEMVSCETRRVAKALAEAPHWQIIETYWNTTMQQNNIWSIAFEARTKEILKEVC
Ga0307514_10000069252F042672N/AVAVISTKYKDLHIWTDCIDGFIRVVKQTDKIHILPVRAIVGPAHLVLENNAASDRIDSVWLVNNHVDLNTYWTVDYSYNIRIKVCRR
Ga0307514_10000069272F079413N/ALDVGCETAHQIKVEKLLFDDAYLSKVVDNKKSWFTRMEVLDLFRHRFIFTTNSFGYQPTTSQYFRPLAPQTLALTATAIHCALSEYASGE
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