Scaffold Ga0307514_10000138

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307514_10000138

Scaffold Ga0307514_10000138

Overview

Basic Information
Taxon OID	3300031649 Open in IMG/M
Scaffold ID	Ga0307514_10000138 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	207993
Total Scaffold Genes	229 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	144 (62.88%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6253	Long. (^o)	-120.532	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F060560	Metagenome	132	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000013813	F006048	AGGAG	MLKQWPTLDITRSKWYQVRAQVDKVKSHFIQSARDNIAELYDLHRFESAAEHSEFLDSLLADNNYLFPVAERVEGGVRSPNPMQRESKAANKSPASTLLPGGRNPAVYLHQILSSGK
Ga0307514_1000013814	F060560	GGA	MINDKDGHIPSPLIMFTCTALHHALLEWQKNKGIHPKASKSKLKADRPDLLNYFNHKNDGGKNASCCAATGPKLLTSPGVADTYTFLMNTWNTLPESYQQRVYKNTLATVKRQIQQAENPMPAMVISTEAAHVDNAIRLDYLTSEVALEEPEIGSTDPNIPIDNNCTDDELHFRMPGGSRDYEDKGDESNERDAIPTASRR
Ga0307514_1000013816	F081959	GAGG	MLTGMSATMQMQMRRNKNRKPMMDQRRMWRTEGIVLESVKIGQYISDM

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