NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000189

Scaffold Ga0307514_10000189


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000189 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)172653
Total Scaffold Genes208 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)141 (67.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F006048Metagenome382Y
F059517Metagenome133Y
F079414Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000189194F079414GGCGGMDLYQSSAVFAAIPVLYTIAESPLERLLESLLESLLKSLLESLLESLFESLLESLLERASHREE
Ga0307514_100001895F004778AGGAVHLKDVLDCFELTDGHLLGITTDNASSNYSMTHELQSTLEASATKWAALKNHIPSMAHIIRLALGTFISSLGVNSHVKSWETHDHDQQFGENETIDFGKSQRHRKEGNVRINKVSAMRPGLANIIEKVSIS
Ga0307514_1000018961F006048N/AVHKGDLERGMLKQMPMLHITLSNRCQVHAQVDKVKFHFLQIAKDYMRELYDLHRFESATEHLELIDSLLADNKYLFPVAEHVEGGVHCPNQRQRESKAAKEWPVST
Ga0307514_1000018986F059517N/AMNKGHYERGMLKQQPTLDITRSIQYQVHAQVDQVKSHFIQSERDTVAQLYDLHRFEPYAEHLEFIHSLLADNIYPFPVTERVEGGVHSRNPKQRVLKAADE
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