NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000222

Scaffold Ga0307514_10000222


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000222 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)151784
Total Scaffold Genes170 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (38.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008531Metagenome332Y
F042672Metagenome157Y
F060560Metagenome132Y
F092994Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000222123F008531GAGGMEWPALGNYILSMVPVIQLALAAFITTVGVKGRTKSWKAHECDQPFREDESIANGISQRFRKEGNARLNKVLAMRPGLARIIEKVLISR
Ga0307514_1000022215F092994N/ALDLTASKRRISAVEMAKRFADGRCCYCGGLNHRVADCAARKKAQTFKAAGAEIKDVGIGSSSKQSGKDEVS
Ga0307514_1000022244F042672N/AVVIPKKYKDLHGWADCVDGFIRVVKQTNQMHIVPIGAIVGPAYLVLENAALGSMDSVWLVYNHVDLDTYWTVY
Ga0307514_1000022291F060560GGAMINDMDGHIPSPLIMFTCTALRHPLLEWQKNKGVHSEASKSKLKADRTDCSNYFHYKKDGGKIASCCAVMGGKSLTLPGVADMYMFLMITWNTLPESYQQTVYNNTLATVKRQIQHAKNPTPAVMISVEAGCIDNALLLDYLASEAALQEPEIGCTDPNIPIDNTCTDD
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