NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000364

Scaffold Ga0307514_10000364


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000364 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)103760
Total Scaffold Genes119 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (66.39%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F008227Metagenome336Y
F048690Metagenome147Y
F080709Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000364102F004778N/AVLDSFELTDGHFLSITTDNASSNYSMTRELQSTLEASAIGWPELKNHIPCMARIIQLALGAFMNSLCVKGRTKSWEAHERDQQFGENESIDIGKSQRLRKEGNARINKVSARRPGLEKIIEKVRIS
Ga0307514_10000364112F004778N/AVLDRVELTDGRLLCITTDNASSNYSTTRELQSTLEASGIEWPALRNHTPCMAHVIQLALGAFMSSLGVKGRTKSWEAHERDQHFGENESIDIGKSQRLRKEGNARINKVSAMKPGLAKIIEKVRIS
Ga0307514_10000364119F048690GAGMLQDMDNMEASCVFYVKVSTFTHLAQSKTTLLTLNQSGMVRLIVRHDLIVSVSFMYYPGDHLRQTSADVLSLEQC
Ga0307514_1000036445F080709N/AMVELSTRKREIRGDGGNHHEKLGLERITCASQLTIPDTAGMSPDPAGNKPNQASSKPNQASRTPDFS
Ga0307514_1000036496F008227N/AMDTQPPPPGERGSNTGRLAVATTNTDILGTQQERRHKSVHRDAADAATKHMTQDAHFKIVRKTGSRTNKKQHAVGCEYIHIDAISGQLIV
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Institute for Fundamental Biomedical Research
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