NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10008354

Scaffold Ga0307514_10008354


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10008354 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8835
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F008227Metagenome336Y
F048690Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_100083543F004778N/AVLDRFGLTDGRLLGITTDNASSNYSMTRKLQSTLEASGIGWPALRNHIPCMAHVIQLALGAFMSSLGIKGRTKSWEAHERDQQFGENESIDIGKSQRLRKEGNARINKVSATRPGLAKIIEKVRIS
Ga0307514_100083547F048690GAGMLQVMDNMEVSCVFYVKVCTFTHLEQSKIGLLTVNKSGIMMLTVQHDMIVSVSFMLYPGDYLRQTSADVRSLKLHPINI
Ga0307514_100083548F008227N/AMDTQPPPPGESGSNTGRLVGATTNTDILGTQQERRHKLVHRYTADAATKHMTQYAHLKIVRKTGSKRNKKQHAVGCEYIHIDAISGQLTV
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