Scaffold Ga0307986_10103394

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307986_10103394

Scaffold Ga0307986_10103394

Overview

Basic Information
Taxon OID	3300031659 Open in IMG/M
Scaffold ID	Ga0307986_10103394 Open in IMG/M
Source Dataset Name	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1379
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5958	Long. (^o)	78.1913	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033949	Metagenome	176	Y
F083256	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307986_101033942	F033949	AGG	MNTKVKWFNEDYDLGCDVSKLEELGFTNSSWKDDIAPSYSTDKMQIFFLNKNKFDEHKSRSKFSVNKILDNENIETIYETDYFYKVLQLAEEGK
Ga0307986_101033943	F083256	GAGG	MKKIDSNNIDTIINKMKSMLNEKELGVKVNFGGARYDSDSFKVTLEVSLPNARSKEEKHLESLMVMRNANPKYYRKWDLTKIVKIKGVDHVLNGYTNRPNSKKPFIILNLTNKKQYLITEEQVDRFIGDQTWVDTLNPISFKVKENRI

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