NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307484_101136

Scaffold Ga0307484_101136


Overview

Basic Information
Taxon OID3300031663 Open in IMG/M
Scaffold IDGa0307484_101136 Open in IMG/M
Source Dataset NameMetatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1309
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035033Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0307484_1011361F035033GGAGMQCRDVELVVEQEGLAPLPEAAQAHMATCRHCRDFMADLATIVSVAGELPAEVHPPARVWISLRAQLELEGIIKTPELPAGSERSSWWLGFNDLFRSRALATLIVGLLIVAAGGLEL
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Institute for Fundamental Biomedical Research
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