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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031669 Open in IMG/M |
| Scaffold ID | Ga0307375_10001206 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - TR-1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28825 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (92.31%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003389 | Metagenome | 489 | Y |
| F003764 | Metagenome | 469 | Y |
| F003942 | Metagenome | 460 | N |
| F004301 | Metagenome / Metatranscriptome | 444 | Y |
| F004832 | Metagenome / Metatranscriptome | 421 | Y |
| F007789 | Metagenome / Metatranscriptome | 344 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307375_1000120610 | F003764 | GGAG | VNRVMQIQDDSPYVLDENPAALLAGAEIEAANFSRCLKIIRFWSQSSTLPRSRHDEMVEEEQRLASLYAAILFEIGSAFGIEQADELKVRIEAACILDDWECPPAEQGLLFPIAADSPTAASPARARK |
| Ga0307375_1000120611 | F004301 | GGAG | MAAMQFSLFNTQPQVATVGIEPSVNARNAKRQLDTLRNQLATAQADLEDVNYNLSIVTMHQRASREGKIDANWWDAAMRFGMLDTGEEPVYRLGSYPVKVLRWIRHLLFTLNAERRDILSAIAKLEPKVTALSQIIGSAIQ |
| Ga0307375_1000120623 | F004832 | AGGAG | MQIVYRNIRFSAKVDRCLRRRWRMHGDLSIRVREALDGVNLLEVELLEVDYRRVHAMQVGVFESVWIAVHEVARLRGCSANTLVNSAVWVAFGAHRSSLRGRPRGPNQREVPVPKACLGG |
| Ga0307375_1000120626 | F007789 | N/A | LLAFYNGPWLNIPFQAIDTAFVFPLTHEIADELERIGGEVLGGVNRSKAFRVMVAYFASIYKLKNKTQTTSA |
| Ga0307375_100012067 | F003389 | AGG | MQITVWSVAADDDNGTYASVHETELAAYRRLIQLTVDSDDKEQVAKAEAFIEAGDLDGLDEWIHAEVIEPLNTYSVDQHKLDVPAASVTAPAEENQHITRRELASVLHGLRLMQEQWEPQMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLSPTEIDDLCERLNMGFCN |
| Ga0307375_100012068 | F003942 | GGAG | MLGRRLNPTIHRYEDVELIEVHSEYLECSFLVAKDEWESGKTLLTIFSPLDSNVLGFSHYRLHRDNISAAGPKLPDGTTAQPGMAETIELQRQAGHAIYADHLSAMLYGTGLNPARS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |