NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307375_10001808

Scaffold Ga0307375_10001808


Overview

Basic Information
Taxon OID3300031669 Open in IMG/M
Scaffold IDGa0307375_10001808 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22710
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003287Metagenome495Y
F004581Metagenome432Y
F014350Metagenome / Metatranscriptome263N

Sequences

Protein IDFamilyRBSSequence
Ga0307375_1000180810F003287AGGAGGMEKQRRNPQTLSVEQFEALRTRLDERGNVPPPQPESYMMGEIVRGVYPQLKKLRENGYTLKMLVRIFEENGVVITTNALSTYMKNLGLPREQAPVRAASKGTVGSPTVEVRRGQFQMKPDVTL
Ga0307375_1000180818F014350N/AMATQVNPLEAPAPSAKPGRRGSKAKEQQTEHAAQAETDFPPIGQEADPQQELDTLENQADAPVRGSYLREKDGYNALSPEQKAVCDKDFESYLDRLTRPIEVKEGETRQDAIQRAKEEYCAARQEHTANHREMAKTMLASKINCLNSEYPRNSFSLRSPDVAKEFLATAFYHNASAAKGLTSFDKDVFAASKKAALREFSALAASVENSGSATKDFNNTFALCIERPPIGAQNQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRATRTKTTQELDR
Ga0307375_1000180819F004581AGGAGGMQQAEIYNGHAGRFYRMAEHIELSMTPQHHQKHGGPDPITTNDITLATTLMNSVYGYPAGKQAVLALSAGMIPGEERSQTVRGLFMMTAGCSEYDQTVTYTILPLPGREIETANLLKATAAYSLERAEAHSRTIPLLTRQPAQLER
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.