NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307374_10216824

Scaffold Ga0307374_10216824


Overview

Basic Information
Taxon OID3300031670 Open in IMG/M
Scaffold IDGa0307374_10216824 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1340
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F003942Metagenome460N

Sequences

Protein IDFamilyRBSSequence
Ga0307374_102168241F003942GGAGMLGRRLNPTIHRYEDVELIEVHSEYLECSFLVAKDEWETGKTLLNLFSPHDGNVLGFPHYRLHRDNISAAGPKLPDGTTAQPGMAEAIELQRQAGHALYADHLSA
Ga0307374_102168243F003764GAGMQIQEDSTYVLDENPAALLTGAQIDAAALHRCLKIVRLWSQSSALSQSRHDEMIEEEQRIANLYAATLLEIGCAFGIELADELKVRIEAACILDPWECPPAEQELLFPIPRDSANAASPVRARK
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