NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307374_10227999

Scaffold Ga0307374_10227999


Overview

Basic Information
Taxon OID3300031670 Open in IMG/M
Scaffold IDGa0307374_10227999 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1284
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005296Metagenome405Y
F009261Metagenome320Y
F047435Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0307374_102279992F005296GGAGMTAWLLWFLPSFEAGFWSALVAGKLRGRGRTRELLVYGSPVRTCLPVIDERLRKSAGTPTKSQAFVARRIAAGLRWLANTRAMDYAILLGLRRIWPRGQTISTEVKMCL
Ga0307374_102279993F009261GGAGGMILTPSNTGNLVAGAGLGIFAWGAFLKADKVPWLKKLMTTKRKELSLDWINRNRGISLLGLEAINLGIHGILSANAVIFALGNTILNIFVLWAFLPFRMARVEKLRIHNVLKGVV
Ga0307374_102279994F047435AGGAGMTKLTLLAVLGLIYLGVLRLAYFFMAVFIILFFGMSAWELIRTARQPAKHPFAAQ
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