NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307374_10432928

Scaffold Ga0307374_10432928


Overview

Basic Information
Taxon OID3300031670 Open in IMG/M
Scaffold IDGa0307374_10432928 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063858Metagenome / Metatranscriptome129N
F089579Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307374_104329281F089579N/AAPHRRLVICNGMAYGLAQRRRLLGRVHDSVARSARECFLLNCAENDRAYACILRGLEAA
Ga0307374_104329282F063858GGAGGVPSKGGRGTTTTNPAVGPPVVAGPAVGRTREEWDTAGFTVAEIARALRRGIDVERLNELAAREDGLVPEEAEELYRYRLRRAQSRLRQLARACARGDEEGIRVAIDDLDGRLSELRRLEEERQRSGLAIGYELELDQRQTAIDQLLELARRRPPGLVAGSDVAPAQPTGDVRLPPIAFQATPNDVP
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