NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307372_10015721

Scaffold Ga0307372_10015721


Overview

Basic Information
Taxon OID3300031671 Open in IMG/M
Scaffold IDGa0307372_10015721 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9537
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007516Metagenome / Metatranscriptome349Y
F013724Metagenome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0307372_1001572115F007516AGGAGGMYRRINPTSRQQLPMRMLFQPLGNGTFLKACEADSFRGLVAAMLDDPAYESGDVEARLVNRLRLADELVLLARIENEPSLLIGDRDADLTINVASDEPLIRSLDRLGLVSLEPTHSAGGTRT
Ga0307372_1001572116F013724N/AWTIEYRYFDSSLDPARLQANIKLACWITKRASTLPDSAIPTERVRLGSHADGQVTDSNDGLLRRFADTIFVRPQDKLKLYWLFQRSAWQPARRVA
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