NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307372_10322129

Scaffold Ga0307372_10322129


Overview

Basic Information
Taxon OID3300031671 Open in IMG/M
Scaffold IDGa0307372_10322129 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)851
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F038518Metagenome165N

Sequences

Protein IDFamilyRBSSequence
Ga0307372_103221291F038518N/AEDVNYNLSVVTMHQRASREGKIDANWWEGAMRFGMLDLDEEPAYRLGSYPVKVMRWIRHLIFTLHAERRDVQLAIAELEPKVAALSQIIGDAIK
Ga0307372_103221292F003764GAGMQIQEGSTYVLDENPAALLSGAEIEAAALYRCLKIVRLWNQSSVLSRSKSKSRHDEVIEEEQRIANLYAATLLEIGCAFGIERADELKVRIEAACILDPWECPPAEQGFLFPILSEPVTAASPVTARK
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