NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307377_10149097

Scaffold Ga0307377_10149097


Overview

Basic Information
Taxon OID3300031673 Open in IMG/M
Scaffold IDGa0307377_10149097 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1853
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007118Metagenome / Metatranscriptome357Y
F095530Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0307377_101490971F095530N/AMACDITSGFALGCRDNTGGITNLYILSGSITTVNTVSEGLING
Ga0307377_101490972F007118N/AMALDVTALSDFNNEVAGELIAKMVYGGSTMEYVTIREGVKFQEPINLMEVDLVLQNGTCVSTPSGSLDFSQRNITVCPRTSFDGICLKDMDRTYLGISALERGSYNETFALATNYSELLVNQFQKSNDQFLWTAASGSSPAGCSSDGLKIIISGSTTGVVVPAAQTALTSSTALAQLDSLIEAIPSDVADRDDLTMFMSVTNFRKFVSGIRSSNSYYFDPNSISNRGGILEMVYPFQNVKVVGTVGLQGSERIVVGPAKQIVAGTDLMSDFSDFQLWYDINTDQLKHRISTKLGVQVAYPEFWVSNDLA
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