NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307377_10280781

Scaffold Ga0307377_10280781


Overview

Basic Information
Taxon OID3300031673 Open in IMG/M
Scaffold IDGa0307377_10280781 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1268
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015093Metagenome / Metatranscriptome257Y
F079802Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0307377_102807811F079802AGAAGMAIQDTLAFLNINEFGITCSIGGSSFVGILDSPVDVIAGGMALSREYSLLAKTSDVSS
Ga0307377_102807813F015093GGAGMRIQMLRNTIVDLKEVKVGDFVETDQKSALLLIGIQKAIPAPLIQEVVVTADEQPQPVQSKPAPKRRKTNDPQPRV

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