NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302122_10225112

Scaffold Ga0302122_10225112


Overview

Basic Information
Taxon OID3300031675 Open in IMG/M
Scaffold IDGa0302122_10225112 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB21_SCM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)695
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.0136Long. (o)-139.5971Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032825Metagenome179Y
F033963Metagenome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0302122_102251122F033963AGGVKMSDHHDFSELDEMILLGFREQAIHPQGLNSSHTYGTLYPVGDPRNDGPPPQEQPKLNSHKLMRPRAGWR
Ga0302122_102251123F032825N/ALVSSVFNLIYLTQYRKPPLLALTTTLENNMSSLQEQLDRLIKRSGPNGYMVQQLRNQIIAEKRNQSTQQMYTSGITANHSPKADAQFMANQPIGASEDE

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