NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318561_10400061

Scaffold Ga0318561_10400061


Overview

Basic Information
Taxon OID3300031679 Open in IMG/M
Scaffold IDGa0318561_10400061 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)754
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001673Metagenome / Metatranscriptome654Y
F040227Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0318561_104000612F001673N/AVVGVFGVADLACDIGTVARVTMRRPWVAMASFVAVLLVLALGHRWSVTASWFTSDKTCRERHATPWFAARLGMDCDRLLRARLWKLYDEGQFGRLRRGRGAVEYMKHLERPDE
Ga0318561_104000613F040227N/ATEAARQRTYIRLRARVDHLEDASSHFYNVINELRRRVSTLEKKLKPLGKDD

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