NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318572_10218567

Scaffold Ga0318572_10218567


Overview

Basic Information
Taxon OID3300031681 Open in IMG/M
Scaffold IDGa0318572_10218567 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1116
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028208Metagenome / Metatranscriptome192Y
F085296Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0318572_102185671F028208N/AWDRSALSSTGLKLDGDLAVIDADVSEAALVEELARTLDKRFPELFAHGLVRHAGGVKEAWIARVDEPFQHFVSRRWYRGSDPDNPTVPKHMVECFGSLGTRQFGIDGPHARAAGKVISVYQFTGGASPATTPRASLPVLPKAAYATACDLFDTIAATAGLTAIKETRNNRGGATPRIFELDADTEIETQDYGVMTVAELECLMRARQARGNAPASTVRCSGSFHDRTRVRTDSHLINWGRRYGLGIWDTMTETTWHRRERAPSARFEFLGQLQARNPFL
Ga0318572_102185672F085296AGGAMNDQFDGDAISRADREFLASLDDHPLMRHPLYSVPPPPRPNYDGCTTIAEKQTAQEMCFPAALDWILVNYAYYSGAFMGKGGIISLVDGKMG
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