NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318560_10022074

Scaffold Ga0318560_10022074


Overview

Basic Information
Taxon OID3300031682 Open in IMG/M
Scaffold IDGa0318560_10022074 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2925
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002225Metagenome / Metatranscriptome580Y
F006567Metagenome / Metatranscriptome370Y
F008416Metagenome / Metatranscriptome333Y

Sequences

Protein IDFamilyRBSSequence
Ga0318560_100220741F002225N/AWIMNESSQSKRIKNVLSLEVARKRTRPPRGSSSGHVSRSSNQRLIERLEAENTLLRDSVVELLLQIQALRNDAG
Ga0318560_100220745F006567N/AMLTSEDHRQLAERCIRLAKECTKPSVAECLMTLAANYLELAEQALVLREPATAVRRQHIKVVQKE
Ga0318560_100220747F008416N/ASNRREDVPSFAREHAWQPRGGSNVHTFIPVLLERLEAENAQLRGSVVELALQIQALRDARGHPQSETQP
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