NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318560_10086521

Scaffold Ga0318560_10086521


Overview

Basic Information
Taxon OID3300031682 Open in IMG/M
Scaffold IDGa0318560_10086521 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1605
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013343Metagenome / Metatranscriptome272Y
F081708Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0318560_100865211F081708N/APMVEIFDIEWLEVLLSVLALIPAAISVYLLHRAAALPSLPDQSSVTSVWRERLYVQASSAGAVAVFFLALLIASQLIEAMSGTVPPTIAWPPHSN
Ga0318560_100865212F013343GAGMGTVVAELVTFFQALKGGSLFVLAPVLIGLALTIAAVAYQVIAIRRFQAASKATQENFETIAADLRKRALEVKKQDEGLRKRDLEAKERDELKGFVKDANAELTEQPQRSQQQQVLKGSRRALKESVSQIIVVGLEDIQNRMLQTDFTGMTSVVFDNSRSAFSGWAADRGRSSLTSWVGGPARQ
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