NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308011_10089417

Scaffold Ga0308011_10089417


Overview

Basic Information
Taxon OID3300031688 Open in IMG/M
Scaffold IDGa0308011_10089417 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #177
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)950
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024225Metagenome207Y
F036475Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0308011_100894171F036475AGGAMTPMQKLTLEILNDCMKIVEKRVSNPVYKKVIVSMGYPYAKKEILRTSDTELKKDMNLVYNRLKKHFEKKQLKDEIDFSNNISDIKVPEFITKQVGDYF
Ga0308011_100894172F024225GAGMKVNFTTETIDRKLYEKSILTYIYDHYLFNDYRRLVEQDKWEINVRTLKDFNWNFYDKNIKNLSKSMPHGVTGDNVVDCYVTDETNRMYYLQNMMVICHELSHMLLKIYYPDSRGMLDNDDTWGKAGDIRNYFSTEIHNRVARGQTKKF
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