NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308011_10131534

Scaffold Ga0308011_10131534


Overview

Basic Information
Taxon OID3300031688 Open in IMG/M
Scaffold IDGa0308011_10131534 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #177
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)761
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016211Metagenome249Y
F019395Metagenome230N

Sequences

Protein IDFamilyRBSSequence
Ga0308011_101315341F019395N/AVGQTLVAEPQTSQREVTERYSVAKVTGVVAYENPRFISTLHWVARCS
Ga0308011_101315343F016211GAGMENRPLTDTEKDEIAELAATKAYDRFYLAVGKSIIKRLLWVIGAGCFATFVFLQE

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