NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308015_10029847

Scaffold Ga0308015_10029847


Overview

Basic Information
Taxon OID3300031694 Open in IMG/M
Scaffold IDGa0308015_10029847 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #231
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2300
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043629Metagenome156Y
F092731Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0308015_100298472F043629GGAMANSTINITIDVLNVDVLLEIEVQWHMSEAGELTIDDFHGYHFDYKTGEYERIPPWLHKIIETTQLLEEEYLQEIEEAADDNL
Ga0308015_100298475F092731AGGAGGMSKTKLSTQATKVYDTLLELNWSEPYLTLEHIQAATGLGRSKLLPKLAELIGEGKVLHGNEEALGELIETYTPKVKGVAYGYPLDYYTFDEWVNHKLTGGI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.