NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308015_10309118

Scaffold Ga0308015_10309118


Overview

Basic Information
Taxon OID3300031694 Open in IMG/M
Scaffold IDGa0308015_10309118 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #231
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)639
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033221Metagenome / Metatranscriptome178Y
F046634Metagenome151Y
F076505Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0308015_103091181F046634AGGAGMSTQQTFVPFSVSKTPEERAEYVKANPHKYMPKAQYDLFKTLNDKIDTLDSKMN
Ga0308015_103091182F033221AGGAGMISYEVLRQIEGDTDTCGNYITLHYDFPFPEDSIVKARELEANRIIQQSFVTSIKQSLINNN
Ga0308015_103091183F076505N/ARCPRNNMTFHIWMGLIAILSSFVMSFLGVILMIHLDFWLGVLLTITGMVCLIRNIPRIGEDI
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Biomedical Sciences Research Center "Alexander Fleming"
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