NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307995_1199854

Scaffold Ga0307995_1199854


Overview

Basic Information
Taxon OID3300031696 Open in IMG/M
Scaffold IDGa0307995_1199854 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #262
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080492Metagenome115N
F088712Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0307995_11998541F088712N/AIKIKGENMYIPIEIKETYNSKSYIMNAGLVKGRNYLIRNGWEYCTNNSFLTNGFNTGHYNRFMKCWKFDNDILNQRDINLTEHNSTMQHLGWK
Ga0307995_11998542F080492AGGAGMKLHHTEYKKNYKTYILECISTEDDLIDKDLSDNEKINYLFDRFNNEYGFAIKRQGKHKAMSEWLQGLAINIPFYYEDIIKLAIDMGSLAENSDDSLQDRVIENYWSFMANIILSFELKEVA
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