NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307995_1325155

Scaffold Ga0307995_1325155


Overview

Basic Information
Taxon OID3300031696 Open in IMG/M
Scaffold IDGa0307995_1325155 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #262
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)505
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079229Metagenome116Y
F092731Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307995_13251551F092731AGGAGGMSKTKLSTQATEVYNTLLELNWSEPYLTLEHIQAATGIGRSKLLPTLAELIGEGKVLHGNEEALGELIETYTPKVKGVAYGYPLDYYTFDQWIDHKLDLPLT
Ga0307995_13251552F079229N/ASMLQKLDSIQYDFNFQHAIVTNDADLLVSSLSDYGVSITIARANELIVNLKKGGASHE

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