NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307998_1105596

Scaffold Ga0307998_1105596


Overview

Basic Information
Taxon OID3300031702 Open in IMG/M
Scaffold IDGa0307998_1105596 Open in IMG/M
Source Dataset NameMarine microbial communities from David Island wharf, Antarctic Ocean - #37
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1037
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5781Long. (o)77.9617Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029486Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0307998_11055961F029486N/ATSIDFSKLKPEDGIRVWTNIEDGVRKRMKDGKSAIPKEVSIWQMVNASFLTTTDKKLKELNTHINNIPFFKLGDQAAANGMSEGDYKRMQIEKNIQLRNDLLESVINKLADMDVDYIFENIIGGKTYVSPNQRDKN

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