NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307997_10017035

Scaffold Ga0307997_10017035


Overview

Basic Information
Taxon OID3300031706 Open in IMG/M
Scaffold IDGa0307997_10017035 Open in IMG/M
Source Dataset NameMarine microbial communities from David Island wharf, Antarctic Ocean - #36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3265
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5781Long. (o)77.9617Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032825Metagenome179Y
F033963Metagenome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0307997_100170354F033963AGGMTDRYDFSELGEMIRLALREQAIHPQGLNSSQTHGTFYPVGDLRNDGRPLQEQPKLNSHKLLRPRAEWR
Ga0307997_100170355F032825GGAGMSSLQEMLDRAIVRHGPDGFMVKQLRNQIMAEKRNQSTQQIYSGGITANHSPKADARFVASQPVGVTKDD

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