Scaffold Ga0315291

Basic Information
Taxon OID	3300031707 Open in IMG/M
Scaffold ID	Ga0315291_10003497 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031707 Open in IMG/M

Scaffold ID

Ga0315291_10003497 Open in IMG/M

Source Dataset Name

Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20271
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (61.29%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

20271

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (61.29%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5895	Long. (^o)	-110.359	Alt. (m)	Depth (m)	92
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5895

Long. (^o)

-110.359

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F010682	Metagenome	300	Y
F015724	Metagenome	252	Y
F023840	Metagenome	208	Y
F025263	Metagenome / Metatranscriptome	202	Y
F047028	Metagenome	150	N
F051095	Metagenome	144	Y
F080002	Metagenome	115	N
F085646	Metagenome	111	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_1000349710	F047028	GGA	MFDLSRGATALIKNLFGGNETERMISAGVVRTILSDMTRLYFENRAAMGEGILVFDPESPEQSKYMTKTDLENDLAIAQEGMDRESEQLFSKIIKIIEKESDSDLALVAMIQYSEIAIHIIDPKEANKKIDEYSNGLFY
Ga0315291_1000349715	F023840	N/A	VTNEPGRIRVGLTLEDDFTLTRLKNAAHSLKGEARDQYLWNTIFRFVCRERAYKSVMGEIGVVIDTEVDIFNDSDNETD
Ga0315291_1000349717	F008401	N/A	MESAKLLTIAQTAELLNCSAGFVRKRISLTESNQPGGWPKGIFVNLQPNGAKSLFRINKDALEAYLNSAEEEATVEESVACAV
Ga0315291_1000349720	F015724	GGAGG	VTRRKGSDEFQWNSHKPKKSKFSFSSFEGASTGHQLSSPMPFKRKFRPDFNLKDFSILYDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGIGAALPGVCYMYPSMSQDMGMRMVAIRPRDSFNFLDFGYSIKSVTQTSGTIYAVELSSNFGPPISFFAGEILSDRFAANGTEKTSYNNYVVIGVGNGTTPITPSFAPIFNSIFISLDTNNSWSVINNETLAAPASLPSVGDYFTTEMRFGCNCPDYLAREDFNLYEYNLRRKYPYTLPQDLKPGLYDAGEDYLASRTENTRDFPGFSRDFGFLYVKKLLNLPSYTDGNKVYSDPNLIYFAPRWCKHIYASFWDMQNRFGDDMFPPAWLAQPTDEPMDDRYRDEFDLNLAKQTTFEKRQKRLRWWEKYSPSKNTVPVHMMYPDMHPTMVKTLNFDTLASGTTTPMTASGFEMFTIDQYDPFAPPDPNITPKLDGGTYSNGVLVSGATLIYDGGRYANGVLIPYPSYPSLINGGTY
Ga0315291_1000349727	F025263	AGGAGG	MTINPNQLSVAKIYPGNYTNVLRYWHEERTMQFENANGVQTSFTDQPIGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLDYYTQPYGSGQNAANQPFLNANVIIPSPDFHKDIRADITDGITVPSGAFVYRTSLRVDGGDVVSSGVAGGSATPRLTLIPAVGQGLRDTTTVVSGQFGTTLTGSSSRIVNGAVGSTNIINSSSLSALTADTRWKLFTTANLGGAVASGLAQGSGIYDPRAAANKLSGKNKALAICEVCWIVADQPPERSDLALQPAGVIESSIYTSTSPS
Ga0315291_1000349729	F010682	GGAG	MVYAAQTNWKYDKNLYHPIQSGPQRTGDNLNLTDTYLTISSGYVPPSGVQQTWYGVNDEGADFGRIPVGPPNLNGYFTTDWRAVPPAISGYWTNYENIQPHASGLLDSYVGFRAQGIYSNANASVQTAYGPEPGLRNFGTHTWYGEQVPDNQLYSPFQTPSSNDNTVDGGGITGGGVTHPTIASPTLTNPTNDTSGSRAAWVYHHPVYCQSLTETRYTGVPGQMGSPVRNSYRGKSLRYVPNYASIYGVLGEGVRNMVRTFSPGTKI
Ga0315291_1000349730	F051095	GAG	MSSHIEKALTMFFEDPEASIACFSGSITESLTHPRGIKKVIPYLIKASLVGYMLATFVSPAIEERFKLTKNEAIATAFIIGYAGIRILAAAERIAEKELGRRLGKDKENDISQ
Ga0315291_100034978	F080002	N/A	MAVTTYTSPAYSQSSTNELKRPCLWDDKHKIENLPIWIYTDNQPPKNIEECEAKLSSLNYTIRDIELQIEIRELELKTGSSRHGNAFDFDRWKVGALKAKQTHLYLLSAYTYWLLNNTPRVLDTASKLDKLIGLLIEDPADFDQKATALLN
Ga0315291_100034979	F085646	N/A	MDQSLREIKQIRDALVNIDVTLQLLIAQKEGKVTSAFVNKKIISQRLNVPSVTIDKLLHQGIVSGGSSGLVEGKHYCKVDPEERNSSKFLFDPHAVMQAAWKNFQNV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315291_10003497

Overview

Ecosystem & Geography

Associated Families

Sequences