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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031707 Open in IMG/M |
| Scaffold ID | Ga0315291_10022488 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7492 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (29.41%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5895 | Long. (o) | -110.359 | Alt. (m) | Depth (m) | 92 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002778 | Metagenome / Metatranscriptome | 530 | N |
| F003786 | Metagenome / Metatranscriptome | 468 | N |
| F009808 | Metagenome | 312 | N |
| F019647 | Metagenome / Metatranscriptome | 228 | N |
| F038230 | Metagenome | 166 | N |
| F054865 | Metagenome / Metatranscriptome | 139 | N |
| F090393 | Metagenome | 108 | N |
| F099306 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315291_1002248810 | F002778 | AGGA | VKEYNAQMMEIKNFCDEVNAWITTSPSAEMLDLCDEYLRQLSAYYSRYTVISGINESIYSQLLMICIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSDNYRTLLSSFRQERILVGHMTT |
| Ga0315291_1002248812 | F090393 | N/A | MALDRKTPFNVVFYDHEQDQINSWQFKGSARLALLVNTITSQKDKIEANNINKIEDIEKALNYMIYELKKFIETPYTTEDNV |
| Ga0315291_1002248813 | F019647 | AGAAG | MKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNINLIDDKGKYKVVEDDAPVQGTDAAEKPDFEQKVFEMCALYSKNYVDIYNAMVAAGIPHENATAATSTIFIQVFQKMR |
| Ga0315291_1002248815 | F003786 | N/A | MSNLTQYQPRNSDEQAIITARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLAFFANIAKEIVKTFGQIAANEIEIAFRLFSAESLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEVAALRYQVQMEERGKAEREKLYAEFPTMIKMFNGKTFEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPADSLDLLTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK |
| Ga0315291_1002248816 | F038230 | GGA | MQCKQDRNAYMKEYMKKYRATMNEYTYKKIRERENQRLRAKYRAMTVEERQKYIEYQRTYHKLKHITNE |
| Ga0315291_100224884 | F099306 | N/A | MMQEKVIRKRLNNLEKIYIAESMKHHNRQNKWFMGIIEQRIKQEKTKLTLLKIGTHGN |
| Ga0315291_100224886 | F009808 | N/A | MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLMLSIPASLMLQFGRFAVVFIDFLNPSEKRSKYPPRVAAAATVIALLELWFSIQGQSTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRRVVREVTKTNISSTQPIKFTMAVCFMLCAYILPAQNNHFFAYNTVSLEKIDKSLLERRYYSDADESYTVDTITYDLLSGINLWDGYSRTTYDNTMFMTYGTQNFEYYPAAGVWKYKNKYYDYIGLLKFVSKYFKRNFLNKKITYGKIRRH |
| Ga0315291_100224887 | F054865 | N/A | MEVKTNRFIIKYKEGIVSVAANDLTEAIERFKELRIETTAKELTIVPADEMFKRKSEIFKGSD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |