NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10030802

Scaffold Ga0315291_10030802


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10030802 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6259
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001215Metagenome746Y
F045546Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0315291_100308027F045546AGGTGGMARKKGSDNFAPKDPKSIGSFASISNLTGADKKYQLLNPLTFKRRFRPAVGTKDYSVVSEYNYASLWSRWRRGYELSMYAQGAYGGLVYSSFKYYVSGTAGVGGYIPGLFFVYPTLRSDTRMQMVGIRPRDTFNFLDFGISIQSVTQYDPTTLAVVLSQRFGSPISFFTGEVLSNRFRADGTEKLYGYNNYTVTAVGLNGVITTPSINPDFDTLFLSVADDKSWSVVNSTTFVIPATGPPLVGEFLTTEIRVQCSCQDFLSRESFNFYNLSLKQRYPYTDILNIDSGFFDAGSNASARVVPSMDYPGYARTFGFVYLNKIYSVPPEYDHKANYSDPSLFYFQPRWCKHIYAAYWDMQRRFNLFNVTSFKLHQPNDEPLDEYYREKFEVDLKKQTSFLKREEDLIWWSRYSPSLGGLPKHLLYSDKYNMVAKTLNFGQLNDLTELQDTNFQLFTIDQFNPLNPGSFPQEIYDGGSYANGVRISSSSNTLDGGQYTNGTLLPPSGPPTFINGGTY
Ga0315291_100308028F001215AGGMASTSTNKQPLMVDRPFLRGARINNGTTVVGNSSNPDFGDLIQLVRVGDIPSEDGALVEDLFVVANEGYPNKSGVRSAAFGVYIYAPNQAAPSTSASLLISKFEVGLSGDTEGLIQRVELPATVAPTPQTGDTNLVRPIEIGKSEALYLEKGYILAIGYLGNGPASVSGGLSPSGLSIFAQGGFY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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