NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10150380

Scaffold Ga0315291_10150380


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10150380 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2435
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015202Metagenome / Metatranscriptome256Y
F015856Metagenome / Metatranscriptome251Y
F022657Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_101503801F022657AGGAGMAEITTSQIGNGTTAYGSDIVVKDLDLDVSNRVKDDTPVLNMCMSKKRKVNSTLPLWTDDIYRTPAVQAQVEGAT
Ga0315291_101503803F015856N/AMINEDTVEFYNNRLTVDISQPSKLTAGQKDQVRHYGSLAEALLKNKDLAMFVHHFKFSLADDLASIRSHQPDDNARRIALSNELAGIDNFVSSLKRAVYLKNRIGNTDVPDIK
Ga0315291_101503804F015202N/AIKLQLALSPNQIIQDNTVRNSAEGLKEALYLVWRTLIQYGDDYGVKKLAQQCGENKEPIFMDYQSWDDMDFCDRKQIRLELALGMQSEENALGRLQIIQKAQNDLYTALTNLVGQGTMTPEMYQKIKKPFADTLYVLGVKDCNTYLPSDDEVAQMIQQGQEAQKSREPSPDDKQKLSMANLNDVKAKQIQMEVAGEDAESQLDFMSMAAGDPKVYS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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