NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10164467

Scaffold Ga0315291_10164467


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10164467 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2303
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000961Metagenome / Metatranscriptome820Y
F012002Metagenome284Y
F025942Metagenome199N
F057209Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_101644674F025942GGAGMNESWLARNIQPVTVVFLLFSYFFFALLSVFELETRGAYVDLLGQAMIIVITGIFAGKTAEKIVDIRTNKGTQNGT
Ga0315291_101644675F012002AGGAMRWAALLMVLVTVSLAQDKLILSNAPLPMPKKKSSCAVQELYIIGLTTHDPAERHKAMLEWLDKSQCSAEDYVRIWNALAEWAGTSDSPILRAKIMEKAK
Ga0315291_101644676F000961GAGMNSPEIDPVKYGALYQKVQDYERRFDEMSAKIDKMETSIDKLVEMANQSKGGFWMGMVAVSAFGSVIGYVANWIGKH
Ga0315291_101644678F057209N/AIGWIPESAITSAQQCVQGQIDSMITPPVSPANTALPWSNHA
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