NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315291_10164577

Scaffold Ga0315291_10164577


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10164577 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2302
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004547Metagenome433Y
F006019Metagenome / Metatranscriptome383Y
F007581Metagenome348Y
F030602Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_101645771F030602GAGGMLSILSGILGFATSGLPSLLGFFQQKGDQKHEREMAKL
Ga0315291_101645772F007581AGGAGMNMEKITNMLFPVIVSAIAWLLTSMASIQSDLINIKSKMPILITEQGVIIDSPQSAEARAKLKDQLKSEIADLHIRVRLLEEHEKTRGYK
Ga0315291_101645773F006019N/AMSFITENNIANLYSALIEFPVFDEYKLPPASKVDFVIVHDESMCGQYEPPQSGEPHVITISTARHTHLYPVLMTLAHEIIHMCVYLETPKTDRYTSHKGLFLKLQKRVANHLGFDPKEL
Ga0315291_101645774F004547AGGAMKQLLMAITLLLLWVFLDGYAEAKELPKQMSMATEAGEIVLTTESCIFTKQGLQGYDYAAYATDKGHPNHEGCWKSDSYEGKQAVYIYFPEINQTAVFDAKLFQPKANI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.