NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10334443

Scaffold Ga0315291_10334443


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10334443 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1469
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066470Metagenome126Y
F075715Metagenome118N
F093236Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_103344432F093236GGAGGVKTEYLRLVTYEPSVTMSNRESVPSPYGPVRAGLTTSQITPDQRLSELLSSLESVVENLNYKSFTLYDMLCTAIEEISAVLSATQIEEGGTDADGS
Ga0315291_103344433F066470GGAGGMTEIARRIETAKRSAVIYRNYRRARERAMTRLSNAYPETYKELLEQEKIVDEQMGKKWLDIDGSTGQSMDLDSDTPPTGGGEGNQASSSPDKGNDGGEA
Ga0315291_103344435F075715N/ANSGEGSVMNKEYLAAKAELCSNLAQEQLTNGDTEEGVKNLKRMIRALEEINLINYLEERGGR
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