NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_11159807

Scaffold Ga0315291_11159807


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_11159807 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)635
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037564Metagenome167N

Sequences

Protein IDFamilyRBSSequence
Ga0315291_111598072F037564AGGAGMKLWTNNTNAVTVVDDNKLWPRCSYILPDELVNPPFNDAIPVPHLIKPYYPGRAEGGTTAVYRAGAIGDAIMATGVIRYLTETSGGAVDVYCPARNMPLYAGLGARLLPLPPTAEAWASYDAHVVLDDLFSGKVGGT
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