NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_100408477

Scaffold Ga0310686_100408477


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_100408477 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61858
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (84.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006902Metagenome / Metatranscriptome362Y
F026939Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1004084776F006902GGAGGMWKITTRGFTLEEVLIMAAMNLLTGAATVPKREKRASRKS
Ga0310686_1004084778F026939GGAGGMTPQTSQPDPNLQAELDRLTYSAYLLTLDPGKAFSAVERAIDGSLEETTVNSDLLERTVELALEDLRLCESRTSWDGESSAYDVALYGSQAINSKAFQSLLDLNGSPILLLDSTSRIAFVLHHLLGYKIPDAAAKARLTERQYRAQLRRAYLQLASFRLQGGTSASHGVEQSAPTWEQNYELVEMDSCLLL
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