NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_101498109

Scaffold Ga0310686_101498109


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_101498109 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4557
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003435Metagenome / Metatranscriptome487Y
F011329Metagenome / Metatranscriptome292Y
F026321Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1014981092F003435GGCGGVALLVAEIGWFALLRPRVAGDLGAIFMLALLPMAVVGYVYLMAAVSAYLASREWDFRLRQVIVIMLGLSAGCFVFALLWLAKVHFEGQLG
Ga0310686_1014981093F011329AGGVNHPFTIQFLGNVEACRAEARILRPSAQPADTPLAVVYETLQGFIVSYPGTAPAARPASPELDAAIAEARAELLHYINRKGEPRPAGITRAGLSLWLMERDDETVMGIALE
Ga0310686_1014981098F026321GGAGGMDETLTQKQREAVEALEGARRAGVPLSDYAKTKGLELRPVYDAIAALRRRGALPPASGPRKPKSKSPFVAVRVRSSPAATIAARSSVVCRLVRSDGCAIECGEWPEPGWVAAVLAGRRDAAA

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