NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_102553284

Scaffold Ga0310686_102553284


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_102553284 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11993
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014643Metagenome / Metatranscriptome261Y
F026986Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_10255328412F014643AGGAGMPQAPARRDHSQASDVAKLVRLHHRRRGWAWVAIGSVIGLVAYAGIDVNLFENLTGTAGILGVIPVFVLLALVLAGLVVVIVDTSRIHRADAGARVSAKGGVSHYPLYAHAHTYPPHHRGSWVFAIVMLLAMTGITVFILPAEVNSWAYVVGAGNKDTFNPVSYTQACGRRGCITVTQGYLSRSGMHVNWSGQVPLGQPISVRDPLWAWGTGRNLNLINGDSSAIPNIVAGLFFDGVTLLLLYIIVVVVRGTPSTRSQRKSVPARRPGRSPPNTSSRSRSQRKRHSSPRTP
Ga0310686_1025532849F026986N/AMSKPKLRLFFGTVKSSAGGRHVMAWADSREHALGLVEAALTATEPVQGSMVGPLMSVPADVMKPGVFVEVKPARDRR
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